ToolPythonBeginner
Counting cells with scipy.ndimage: how many are there, and how large?
- area = ndi.sum_labels(np.ones_like(image), labels, index=ids) * px**2
- cell_area = ndi.sum_labels(np.ones_like(image), cells, np.arange(1, cells.max() + 1)) * px**2
- a = ndi.sum_labels(np.ones_like(image), lab, np.arange(1, k + 1)) * px**2
- largest = ndi.sum_labels(np.ones_like(image), lab, np.arange(1, k + 1)).max() * px**2